Strader, L.C., Chen, T., Dong, X., Edwards, D., Sureshkumar, S., Balasubramanian, S., Antunes, M.S., Zebluim, L., Chaisupa, P. and Wright, R.C. (2025). Core biological principles and tools stemming from basic Arabidopsis research. The Plant Cell 37(7): koaf141. https://doi.org/10.1093/plcell/koaf141

Kassaw, T.K., Xu, W., Zalewski, C.S., Kiwimagi, K., Weiss, R., Antunes, M.S., Prasad, A. and Medford, J.I. (2025). Genetic Toggle Switch in Plants. ACS Synthetic Biology 14(6): 1988-2001. https://doi.org/10.1021/acssynbio.4c00777

Ferreira, S.S.; Pandey, S.; Hemminger, J.; Bozdag, S.; Antunes, M.S. (2025) Early changes in microRNA expression in Arabidopsis plants infected with the fungal pathogen Fusarium graminearum. PLoS ONE 20(2): e0318532. https://doi.org/10.1371/journal.pone.0318532

Monti, D.L.; Gill, J.C.; Adair, T.L.; Adams, S.D.; Ahumada-Santos, Y.P.; Amaya, I.; Anders, K.; Anderson, J.R.; Antunes, M.S.; Ayuk, M.; Baliraine, F.; (+103 authors); Graham, M.J.; Sivanathan, V. (2024) An inclusive Research Education Community (iREC) Model to Facilitate Undergraduate Science Education Reform. Frontiers in Education 9: 1442318.  https://doi.org/10.3389/feduc.2024.1442318

Ferreira, S.S.; Antunes, M.S. (2024) Genetically encoded Boolean logic operators to sense and integrate phenylpropanoid metabolite levels in plants. New Phytologist 243: 674-687. http://doi.org/10.1111/nph.19823

Anderson, C.E., Ferreira, S.S.; Antunes, M.S. (2023). Integration of multiple stress signals in plants using synthetic Boolean logic gates. Plant Physiology 192(4): 3189-3202. https://doi.org/10.1093/plphys/kiad254

Ferreira, S.S.; Anderson, C.E.; Antunes, M.S. (2023) A logical way to reprogram plants. Biochemical and Biophysical Research Communications 654: 80-86. https://doi.org/10.1016/j.bbrc.2023.02.080

Amack, S.C.; Ferreira, S.S.; Antunes, M.S. (2023) Tuning the Transcriptional Activity of the CaMV 35S Promoter in Plants by Single-Nucleotide Changes in the TATA Box. ACS Synthetic Biology 12(1): 178-185. https://doi.org/10.1021/acssynbio.2c00457

Hanauer, D.I.; Zhang, T.; Graham, M.J.; Adams, S.D.; Yesmi, P.; lvey, R.M.; Antunes, M.S.; Ayuk, M.A.; Báez-Flores, M.E.; Bancroft, C.T.; (+130 authors); Jacobs-Sera, D.; Hatfull, G.F.; Asai, D.J.; Sivanathan, V. (2023) Models of Classroom Assessment for Course-Based Research Experiences. Frontiers in Education 8: 1279921. https://doi.org/10.3389/feduc.2023.1279921

Ferreira, S.S.; Antunes, M.S. (2021) Re-engineering plant phenylpropanoid metabolism with the aid of synthetic biosensors. Frontiers in Plant Science 12:701385. https://doi.org/10.3389/fpls.2021.701385

Amack, S.C.; Antunes, M.S. (2020) CaMV35S promoter - A plant biology and biotechnology workhorse in the era of synthetic biology. Current Plant Biology 24: 100179. https://doi.org/10.1016/j.cpb.2020.100179

Kassaw, T.K.; Donayre-Torres, A.J.; Antunes, M.S.; Morey, K.J.; Medford, J.I. (2018) Engineering Synthetic Regulatory Circuits in Plants. Plant Science 273: 13-22. https://doi.org/10.1016/j.plantsci.2018.04.005